Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0197Transcriptional regulator. (214 aa)    
Predicted Functional Partners:
EthR
HTH-type transcriptional repressor EthR.
  
    0.833
RN09_4262
Hypothetical protein.
   
    0.678
RN09_4360
HTH-type transcriptional regulator KstR2.
  
   
0.655
RN09_0196
Hypothetical protein.
       0.555
RN09_3966
DNA methylase.
   
    0.553
RN09_0419
Transcriptional regulator.
   
    0.552
RN09_1454
Hypothetical protein.
   
    0.551
RN09_2444
HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
 
 0.515
RN09_3866
Transcriptional regulator.
   
    0.501
RN09_0294
Transcriptional regulator.
  
  
 0.500
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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