Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LprKMce family lipoprotein LprK. (390 aa)    
Predicted Functional Partners:
Mce1F
Mce family protein Mce1F.
 
 
 0.994
Mce1C
Mce family protein Mce1C.
 
 
 0.981
Mce1D
Mce family protein Mce1D.
 
 
 0.978
Mce1A
Mce family protein Mce1A; Overlaps another CDS with the same product name.
 
 
 0.973
YrbE1B
Membrane protein.
 
 
 0.969
Mce1B
Mce family protein Mce1B; Overlaps another CDS with the same product name.
 
 
 0.964
YrbE2A
Hypothetical protein.
 
 
 0.958
RN09_0211
Mce family protein Mce1B; Overlaps another CDS with the same product name.
 
 
 0.955
YrbE1A
Membrane protein.
 
 
 0.953
YrbE4B
Integral membrane protein.
 
 
 0.942
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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