Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RN09_0218Mce associated transmembrane protein. (322 aa)    
Predicted Functional Partners:
RN09_0217
Mce associated membrane protein.
  
  
 0.904
Mce1F
Mce family protein Mce1F.
 
  
 0.899
LprK
Mce family lipoprotein LprK.
 
     0.865
Mce1D
Mce family protein Mce1D.
 
   
 0.773
RN09_2212
ESX-5 type VII secretion system protein EccE.
   
    0.761
Mce1C
Mce family protein Mce1C.
 
   
 0.739
RN09_0219
Mce associated protein.
  
  
 0.735
RN09_0220
Mce associated membrane protein.
  
  
 0.716
RN09_4653
Decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
   
    0.699
Mce1B
Mce family protein Mce1B; Overlaps another CDS with the same product name.
 
   
 0.652
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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