Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RN09_0220Mce associated membrane protein. (244 aa)    
Predicted Functional Partners:
RN09_0217
Mce associated membrane protein.
  
  
 0.920
RN09_0219
Mce associated protein.
       0.872
RN09_2042
Polyketide synthase; Overlaps another CDS with the same product name.
  
 0.867
Mce1F
Mce family protein Mce1F.
     
 0.805
YrbE1A
Membrane protein.
  
  
 0.783
PknB
Serine/threonine-protein kinase PknB.
  
    0.770
PhoY1
Phosphate transport system transcriptional regulator PhoY; Plays a role in the regulation of phosphate uptake.
   
    0.765
MoxR2
Methanol dehydrogenase transcriptional regulator MoxR.
  
    0.762
Pks4
Polyketide beta-ketoacyl synthase.
   
 0.748
RN09_1889
Polyketide synthase; Overlaps another CDS with the same product name.
   
 0.748
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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