STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0229Beta-glucosidase BglS. (264 aa)    
Predicted Functional Partners:
RN09_0228
Hypothetical protein.
  
    0.818
RN09_3760
Hypothetical protein.
     
 0.572
RN09_0227
Hypothetical protein.
  
    0.556
RN09_0230
O-methyltransferase.
       0.541
RN09_4384
LacI family transcriptional regulator; Overlaps another CDS with the same product name.
 
   
 0.538
AglA
Alpha-glucosidase AglA.
  
  
 0.508
GatA
glutamyl-tRNA(GLN) amidotransferase subunit A.
      
 0.503
RN09_3660
glutamyl-tRNA(GLN) amidotransferase subunit A.
      
 0.503
CelA1
Cellulase CelA; Belongs to the glycosyl hydrolase family 6.
     
 0.485
CelA2b
Glycosyl hydrolase family 12; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
     
 0.484
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.