Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0239Two component transcriptional regulator. (232 aa)    
Predicted Functional Partners:
RN09_0238
Multidrug ABC transporter ATPase/permease.
  
  
 0.858
RN09_1036
Sensor histidine kinase NarS.
 
 
 0.786
RN09_2500
Two component sensor histidine kinase DosT.
 
 
 0.786
DevS
Two component sensor histidine kinase DevS.
 
 
 0.778
DevR
Two component transcriptional regulator DevR.
  
   
 0.694
NarL
Nitrate/nitrite response transcriptional regulator NarL.
  
     0.665
RN09_0236
Hypothetical protein.
  
  
 0.662
RN09_1669
Hypothetical protein.
 
 
 0.639
RN09_0241
Oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.546
RN09_0240
HTH-type transcriptional regulator.
       0.528
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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