Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0282Transcriptional regulator. (229 aa)    
Predicted Functional Partners:
NrdB
Ribonucleoside-diphosphate reductase subunit beta NrdB.
  
    0.970
Php
Phosphotriesterase.
 
     0.743
FadE4
acyl-CoA dehydrogenase FadE4.
       0.743
RN09_4683
TetR family transcriptional regulator.
  
  
 0.631
RN09_1375
Hypothetical protein.
      
 0.509
RN09_4682
Dehydrogenase.
  
     0.498
RN09_2988
Transmembrane protein.
 
   
 0.471
RN09_1314
Hypothetical protein.
  
     0.448
RN09_0163
Transmembrane protein.
  
     0.430
RN09_0061
Membrane protein.
  
     0.426
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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