Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LpqILipoprotein LpqI; Overlaps another CDS with the same product name. (269 aa)    
Predicted Functional Partners:
RN09_0292
Lipoprotein LpqI; Overlaps another CDS with the same product name.
      0.886
RN09_0291
Hypothetical protein.
     
 0.610
NagA
N-acetylglucosamine-6-phosphate deacetylase NagA.
 
  
 0.594
RN09_0294
Transcriptional regulator.
       0.559
LpqR
Lipoprotein LpqR; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
 
      0.499
RN09_0289
Alpha-(1->3)-arabinofuranosyltransferase; Overlaps another CDS with the same product name.
     
 0.496
RN09_0290
Alpha-(1->3)-arabinofuranosyltransferase; Overlaps another CDS with the same product name.
     
 0.496
GltB
Glutamate synthase large subunit.
     
 0.407
RN09_3940
Hypothetical protein.
  
    0.405
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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