Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
vapC-3Ribonuclease VapC24; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (145 aa)    
Predicted Functional Partners:
RN09_0295
Antitoxin VapB24.
       0.872
RN09_3584
Chorismate pyruvate-lyase.
  
     0.732
RN09_1128
Hypothetical protein.
  
     0.667
RN09_4163
Hypothetical protein.
  
     0.654
PPE6
PPE family protein PPE5.
  
     0.644
RN09_0294
Transcriptional regulator.
       0.639
RN09_2563
Hypothetical protein.
  
     0.634
RN09_4083
PPE family protein PPE55; Overlaps another CDS with the same product name.
  
     0.628
RN09_4091
PPE family protein PPE56.
  
     0.621
PE_PGRS30
PE-PGRS family protein PE_PGRS30.
  
     0.620
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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