Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0306Hypothetical protein. (97 aa)    
Predicted Functional Partners:
RN09_0305
Succinate dehydrogenase membrane anchor subunit.
 
   
 0.867
RN09_0304
Succinate dehydrogenase flavoprotein subunit.
 
   
 0.794
RN09_0533
Tuberculin-like peptide.
  
     0.746
RN09_4178
Hypothetical protein.
  
     0.741
LppL
Lipoprotein LppL.
  
     0.733
RN09_1081
Transmembrane protein.
  
     0.732
RN09_3335
Transmembrane alanine-rich protein.
  
     0.714
RN09_2002
Hypothetical protein.
  
     0.701
RN09_4468
Hypothetical protein.
  
     0.682
RN09_2263
Hypothetical protein.
  
     0.680
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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