Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CysG | HemD | RN09_3449 | RN09_0627 | Multifunctional uroporphyrin-III C-methyltransferase/precorrin-2 oxidase/ferrochelatase. | uroporphyrin-III C-methyltransferase. | 0.995 |
CysG | NarK3 | RN09_3449 | RN09_0317 | Multifunctional uroporphyrin-III C-methyltransferase/precorrin-2 oxidase/ferrochelatase. | Nitrate/nitrite transporter; Overlaps another CDS with the same product name. | 0.445 |
CysG | NirA | RN09_3449 | RN09_2937 | Multifunctional uroporphyrin-III C-methyltransferase/precorrin-2 oxidase/ferrochelatase. | Sulfite reductase; Overlaps another CDS with the same product name. | 0.937 |
CysG | RN09_0315 | RN09_3449 | RN09_0315 | Multifunctional uroporphyrin-III C-methyltransferase/precorrin-2 oxidase/ferrochelatase. | Hypothetical protein. | 0.962 |
CysG | RN09_0316 | RN09_3449 | RN09_0316 | Multifunctional uroporphyrin-III C-methyltransferase/precorrin-2 oxidase/ferrochelatase. | Transcriptional regulator. | 0.985 |
CysG | RN09_0318 | RN09_3449 | RN09_0318 | Multifunctional uroporphyrin-III C-methyltransferase/precorrin-2 oxidase/ferrochelatase. | Nitrate/nitrite transporter; Overlaps another CDS with the same product name. | 0.445 |
CysG | RN09_2938 | RN09_3449 | RN09_2938 | Multifunctional uroporphyrin-III C-methyltransferase/precorrin-2 oxidase/ferrochelatase. | Sulfite reductase; Overlaps another CDS with the same product name. | 0.934 |
CysG | cysH | RN09_3449 | RN09_2939 | Multifunctional uroporphyrin-III C-methyltransferase/precorrin-2 oxidase/ferrochelatase. | Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily. | 0.948 |
HemD | CysG | RN09_0627 | RN09_3449 | uroporphyrin-III C-methyltransferase. | Multifunctional uroporphyrin-III C-methyltransferase/precorrin-2 oxidase/ferrochelatase. | 0.995 |
HemD | NirA | RN09_0627 | RN09_2937 | uroporphyrin-III C-methyltransferase. | Sulfite reductase; Overlaps another CDS with the same product name. | 0.763 |
HemD | RN09_0315 | RN09_0627 | RN09_0315 | uroporphyrin-III C-methyltransferase. | Hypothetical protein. | 0.687 |
HemD | RN09_0316 | RN09_0627 | RN09_0316 | uroporphyrin-III C-methyltransferase. | Transcriptional regulator. | 0.958 |
HemD | RN09_2938 | RN09_0627 | RN09_2938 | uroporphyrin-III C-methyltransferase. | Sulfite reductase; Overlaps another CDS with the same product name. | 0.767 |
HemD | cysH | RN09_0627 | RN09_2939 | uroporphyrin-III C-methyltransferase. | Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily. | 0.705 |
NarK3 | CysG | RN09_0317 | RN09_3449 | Nitrate/nitrite transporter; Overlaps another CDS with the same product name. | Multifunctional uroporphyrin-III C-methyltransferase/precorrin-2 oxidase/ferrochelatase. | 0.445 |
NarK3 | RN09_0314 | RN09_0317 | RN09_0314 | Nitrate/nitrite transporter; Overlaps another CDS with the same product name. | Hypothetical protein. | 0.505 |
NarK3 | RN09_0315 | RN09_0317 | RN09_0315 | Nitrate/nitrite transporter; Overlaps another CDS with the same product name. | Hypothetical protein. | 0.694 |
NarK3 | RN09_0316 | RN09_0317 | RN09_0316 | Nitrate/nitrite transporter; Overlaps another CDS with the same product name. | Transcriptional regulator. | 0.898 |
NarK3 | RN09_0318 | RN09_0317 | RN09_0318 | Nitrate/nitrite transporter; Overlaps another CDS with the same product name. | Nitrate/nitrite transporter; Overlaps another CDS with the same product name. | 0.979 |
NarK3 | RN09_1691 | RN09_0317 | RN09_1691 | Nitrate/nitrite transporter; Overlaps another CDS with the same product name. | Alpha-pyrone synthesis polyketide synthase-like protein. | 0.622 |
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