Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0331Hypothetical protein. (377 aa)    
Predicted Functional Partners:
RN09_0332
Transcriptional regulator.
 
     0.880
FadE6
acyl-CoA dehydrogenase FadE6.
       0.740
RN09_0385
Hypothetical protein.
  
     0.724
RN09_0945
HTH-type transcriptional regulator.
  
     0.673
PhoH1
Protein PhoH.
      
 0.672
RN09_3405
Hypothetical protein.
      
 0.672
RN09_0174
Hypothetical protein.
  
     0.670
RN09_0333
Hypothetical protein.
 
     0.662
RN09_3851
Hypothetical protein.
  
     0.646
RN09_0635
Hypothetical protein.
  
   
 0.609
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.