STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PE5PE family protein PE5. (102 aa)    
Predicted Functional Partners:
PPE4
PPE family protein PPE4; Belongs to the mycobacterial PPE family.
     
 0.979
RN09_0347
ESX-3 secretion system protein EccB3.
     
 0.916
RN09_0346
ESX-3 secretion system protein EccA.
       0.880
EsxG
ESAT-6 like protein EsxG; Belongs to the WXG100 family.
     
 0.870
RN09_0352
PPE family protein PPE4.
     
 0.837
EsxH
ESAT-6-like protein EsxH; Belongs to the WXG100 family.
     
 0.824
RN09_0348
ESX-3 secretion system protein EccC3; Overlaps another CDS with the same product name.
       0.805
RN09_0349
ESX-3 secretion system protein EccC3; Overlaps another CDS with the same product name.
       0.805
PPE2
PPE family protein PPE2; Belongs to the mycobacterial PPE family.
      
 0.640
PPE37
PPE family protein PPE37; Overlaps another CDS with the same product name.
     
 0.637
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.