Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EsxG | MycP3 | RN09_0353 | RN09_0358 | ESAT-6 like protein EsxG; Belongs to the WXG100 family. | Membrane-anchored mycosin MycP. | 0.716 |
EsxG | RN09_0346 | RN09_0353 | RN09_0346 | ESAT-6 like protein EsxG; Belongs to the WXG100 family. | ESX-3 secretion system protein EccA. | 0.603 |
EsxG | RN09_0347 | RN09_0353 | RN09_0347 | ESAT-6 like protein EsxG; Belongs to the WXG100 family. | ESX-3 secretion system protein EccB3. | 0.694 |
EsxG | RN09_0348 | RN09_0353 | RN09_0348 | ESAT-6 like protein EsxG; Belongs to the WXG100 family. | ESX-3 secretion system protein EccC3; Overlaps another CDS with the same product name. | 0.599 |
EsxG | RN09_0349 | RN09_0353 | RN09_0349 | ESAT-6 like protein EsxG; Belongs to the WXG100 family. | ESX-3 secretion system protein EccC3; Overlaps another CDS with the same product name. | 0.599 |
EsxG | RN09_0355 | RN09_0353 | RN09_0355 | ESAT-6 like protein EsxG; Belongs to the WXG100 family. | ESX-3 secretion-associated protein EspG3. | 0.952 |
EsxG | RN09_0357 | RN09_0353 | RN09_0357 | ESAT-6 like protein EsxG; Belongs to the WXG100 family. | Transmembrane protein. | 0.894 |
EsxG | RN09_0359 | RN09_0353 | RN09_0359 | ESAT-6 like protein EsxG; Belongs to the WXG100 family. | ESX-3 secretion system protein EccE. | 0.768 |
MycP3 | EsxG | RN09_0358 | RN09_0353 | Membrane-anchored mycosin MycP. | ESAT-6 like protein EsxG; Belongs to the WXG100 family. | 0.716 |
MycP3 | RN09_0346 | RN09_0358 | RN09_0346 | Membrane-anchored mycosin MycP. | ESX-3 secretion system protein EccA. | 0.870 |
MycP3 | RN09_0347 | RN09_0358 | RN09_0347 | Membrane-anchored mycosin MycP. | ESX-3 secretion system protein EccB3. | 0.965 |
MycP3 | RN09_0348 | RN09_0358 | RN09_0348 | Membrane-anchored mycosin MycP. | ESX-3 secretion system protein EccC3; Overlaps another CDS with the same product name. | 0.895 |
MycP3 | RN09_0349 | RN09_0358 | RN09_0349 | Membrane-anchored mycosin MycP. | ESX-3 secretion system protein EccC3; Overlaps another CDS with the same product name. | 0.901 |
MycP3 | RN09_0355 | RN09_0358 | RN09_0355 | Membrane-anchored mycosin MycP. | ESX-3 secretion-associated protein EspG3. | 0.976 |
MycP3 | RN09_0357 | RN09_0358 | RN09_0357 | Membrane-anchored mycosin MycP. | Transmembrane protein. | 0.988 |
MycP3 | RN09_0359 | RN09_0358 | RN09_0359 | Membrane-anchored mycosin MycP. | ESX-3 secretion system protein EccE. | 0.985 |
MycP3 | RN09_2196 | RN09_0358 | RN09_2196 | Membrane-anchored mycosin MycP. | ESX-5 type VII secretion system protein EccB5; Overlaps another CDS with the same product name. | 0.710 |
MycP3 | RN09_2197 | RN09_0358 | RN09_2197 | Membrane-anchored mycosin MycP. | ESX-5 type VII secretion system protein EccB5; Overlaps another CDS with the same product name. | 0.541 |
RN09_0346 | EsxG | RN09_0346 | RN09_0353 | ESX-3 secretion system protein EccA. | ESAT-6 like protein EsxG; Belongs to the WXG100 family. | 0.603 |
RN09_0346 | MycP3 | RN09_0346 | RN09_0358 | ESX-3 secretion system protein EccA. | Membrane-anchored mycosin MycP. | 0.870 |
page 1 of 5