Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RN09_0359ESX-3 secretion system protein EccE. (331 aa)    
Predicted Functional Partners:
RN09_0357
Transmembrane protein.
  
 
 0.998
RN09_0355
ESX-3 secretion-associated protein EspG3.
  
  
 0.984
MycP3
Membrane-anchored mycosin MycP.
  
  
 0.982
RN09_0347
ESX-3 secretion system protein EccB3.
  
 
 0.981
RN09_0348
ESX-3 secretion system protein EccC3; Overlaps another CDS with the same product name.
  
 
 0.943
RN09_0349
ESX-3 secretion system protein EccC3; Overlaps another CDS with the same product name.
  
 
 0.943
RN09_4222
ESX-4 secretion system protein EccD4.
  
 
 0.882
RN09_0346
ESX-3 secretion system protein EccA.
  
  
 0.841
RN09_0352
PPE family protein PPE4.
  
  
 0.819
PPE4
PPE family protein PPE4; Belongs to the mycobacterial PPE family.
  
  
 0.797
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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