RN09_0372 protein (Mycobacterium tuberculosis variant africanum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

RN09_0372

Dehydrogenase/reductase. (302 aa)

Predicted Functional Partners:

RN09_0371

0.837

RN09_3100

0.678

RN09_3101

0.678

Fas

0.678

RN09_2042

0.539

RN09_0369

0.504

vapC-4

0.504

RN09_1891

0.497

RN09_0500

0.477

RN09_2045

0.477

Your Current Organism:

Mycobacterium tuberculosis variant africanum

NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Fas	RN09_0372	RN09_3102	RN09_0372	Fatty acid synthase; Overlaps another CDS with the same product name.	Dehydrogenase/reductase.	0.678
Fas	RN09_0500	RN09_3102	RN09_0500	Fatty acid synthase; Overlaps another CDS with the same product name.	Membrane bound polyketide synthase.	0.998
Fas	RN09_1891	RN09_3102	RN09_1891	Fatty acid synthase; Overlaps another CDS with the same product name.	Polyketide synthase; Overlaps another CDS with the same product name.	0.998
Fas	RN09_2042	RN09_3102	RN09_2042	Fatty acid synthase; Overlaps another CDS with the same product name.	Polyketide synthase; Overlaps another CDS with the same product name.	0.998
Fas	RN09_2045	RN09_3102	RN09_2045	Fatty acid synthase; Overlaps another CDS with the same product name.	Polyketide synthase; Overlaps another CDS with the same product name.	0.998
Fas	RN09_3100	RN09_3102	RN09_3100	Fatty acid synthase; Overlaps another CDS with the same product name.	Fatty acid synthase; Overlaps another CDS with the same product name.	0.999
Fas	RN09_3101	RN09_3102	RN09_3101	Fatty acid synthase; Overlaps another CDS with the same product name.	Fatty acid synthase; Overlaps another CDS with the same product name.	0.999
RN09_0369	RN09_0371	RN09_0369	RN09_0371	Antitoxin VapB2.	Transcriptional regulator.	0.522
RN09_0369	RN09_0372	RN09_0369	RN09_0372	Antitoxin VapB2.	Dehydrogenase/reductase.	0.504
RN09_0369	vapC-4	RN09_0369	RN09_0370	Antitoxin VapB2.	Ribonuclease VapC2; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.	0.995
RN09_0371	RN09_0369	RN09_0371	RN09_0369	Transcriptional regulator.	Antitoxin VapB2.	0.522
RN09_0371	RN09_0372	RN09_0371	RN09_0372	Transcriptional regulator.	Dehydrogenase/reductase.	0.837
RN09_0371	vapC-4	RN09_0371	RN09_0370	Transcriptional regulator.	Ribonuclease VapC2; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.	0.567
RN09_0372	Fas	RN09_0372	RN09_3102	Dehydrogenase/reductase.	Fatty acid synthase; Overlaps another CDS with the same product name.	0.678
RN09_0372	RN09_0369	RN09_0372	RN09_0369	Dehydrogenase/reductase.	Antitoxin VapB2.	0.504
RN09_0372	RN09_0371	RN09_0372	RN09_0371	Dehydrogenase/reductase.	Transcriptional regulator.	0.837
RN09_0372	RN09_0500	RN09_0372	RN09_0500	Dehydrogenase/reductase.	Membrane bound polyketide synthase.	0.477
RN09_0372	RN09_1891	RN09_0372	RN09_1891	Dehydrogenase/reductase.	Polyketide synthase; Overlaps another CDS with the same product name.	0.497
RN09_0372	RN09_2042	RN09_0372	RN09_2042	Dehydrogenase/reductase.	Polyketide synthase; Overlaps another CDS with the same product name.	0.539
RN09_0372	RN09_2045	RN09_0372	RN09_2045	Dehydrogenase/reductase.	Polyketide synthase; Overlaps another CDS with the same product name.	0.477