Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0396Hypothetical protein. (220 aa)    
Predicted Functional Partners:
Pcp
Pyrrolidone-carboxylate peptidase.
       0.727
RN09_3311
Transmembrane alanine/glycine-rich protein.
  
     0.710
dcd
Deoxycytidine triphosphate deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate.
       0.695
RN09_4530
Hypothetical protein.
  
     0.678
RN09_3468
Hypothetical protein.
  
     0.661
RN09_3335
Transmembrane alanine-rich protein.
  
     0.575
LpqF
Lipoprotein LpqF.
  
     0.549
RN09_3302
Hypothetical protein.
  
     0.538
EsxT
ESAT-6 like protein EsxT; Belongs to the WXG100 family.
  
     0.534
FbpD
MPT51/MPB51 antigen.
  
     0.515
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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