Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LpqKLipoprotein LpqK. (409 aa)    
Predicted Functional Partners:
FadE7
acyl-CoA dehydrogenase FadE7.
       0.872
RN09_0489
Hypothetical protein.
       0.801
RN09_1110
Hypothetical protein.
  
   
 0.754
RN09_1111
Hypothetical protein.
  
   
 0.684
RN09_1112
Hypothetical protein.
  
   
 0.642
RN09_0492
Transmembrane protein.
       0.629
OtsB2
Trehalose 6-phosphate phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
       0.533
RN09_0488
Hypothetical protein.
       0.486
RN09_2824
Hypothetical protein.
 
     0.440
RN09_1688
Hypothetical protein.
  
     0.435
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
Server load: low (6%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.