Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PknGSerine/threonine-protein kinase PknG. (750 aa)    
Predicted Functional Partners:
GlnH
Glutamine-binding lipoprotein GlnH.
 
  
 0.993
RN09_0510
Membrane protein; Overlaps another CDS with the same product name.
 
  
 0.973
RN09_0511
Membrane protein; Overlaps another CDS with the same product name.
 
  
 0.973
Cfp17
Glycogen accumulation regulator GarA.
   
 
 0.967
PknF
Serine/threonine-protein kinase PknF.
  
   
 0.872
Ppp
Phosphoserine/threonine phosphatase PstP.
 
 
 0.820
MutT3
8-oxo-dGTP diphosphatase; Belongs to the Nudix hydrolase family.
       0.759
PknB
Serine/threonine-protein kinase PknB.
 
 
0.697
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
     
 0.693
RN09_2147
Serine/threonine-protein kinase PknF.
  
   
 0.688
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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