Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Dxs1 | thiG | RN09_3268 | RN09_0517 | 1-deoxy-D-xylulose 5-phosphate synthase. | Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.934 |
FbiC | MoeB2 | RN09_1451 | RN09_3785 | FO synthase. | Molybdenum cofactor biosynthesis protein MoeB. | 0.633 |
FbiC | ThiD | RN09_1451 | RN09_0524 | FO synthase. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.573 |
FbiC | ThiS | RN09_1451 | RN09_0516 | FO synthase. | Sulfur carrier protein ThiS. | 0.791 |
FbiC | thiC | RN09_1451 | RN09_0525 | FO synthase. | Phosphomethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.880 |
FbiC | thiE | RN09_1451 | RN09_0513 | FO synthase. | Thiamine-phosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.870 |
FbiC | thiG | RN09_1451 | RN09_0517 | FO synthase. | Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.928 |
MoeB2 | FbiC | RN09_3785 | RN09_1451 | Molybdenum cofactor biosynthesis protein MoeB. | FO synthase. | 0.633 |
MoeB2 | RN09_1650 | RN09_3785 | RN09_1650 | Molybdenum cofactor biosynthesis protein MoeB. | Sulfur carrier protein CysO. | 0.980 |
MoeB2 | ThiD | RN09_3785 | RN09_0524 | Molybdenum cofactor biosynthesis protein MoeB. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.716 |
MoeB2 | ThiS | RN09_3785 | RN09_0516 | Molybdenum cofactor biosynthesis protein MoeB. | Sulfur carrier protein ThiS. | 0.791 |
MoeB2 | thiC | RN09_3785 | RN09_0525 | Molybdenum cofactor biosynthesis protein MoeB. | Phosphomethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.694 |
MoeB2 | thiE | RN09_3785 | RN09_0513 | Molybdenum cofactor biosynthesis protein MoeB. | Thiamine-phosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.746 |
MoeB2 | thiG | RN09_3785 | RN09_0517 | Molybdenum cofactor biosynthesis protein MoeB. | Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.924 |
RN09_0514 | ThiD | RN09_0514 | RN09_0524 | Thiamine biosynthesis oxidoreductase ThiO; Overlaps another CDS with the same product name. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.539 |
RN09_0514 | ThiO | RN09_0514 | RN09_0515 | Thiamine biosynthesis oxidoreductase ThiO; Overlaps another CDS with the same product name. | Thiamine biosynthesis oxidoreductase ThiO; Overlaps another CDS with the same product name. | 0.773 |
RN09_0514 | ThiS | RN09_0514 | RN09_0516 | Thiamine biosynthesis oxidoreductase ThiO; Overlaps another CDS with the same product name. | Sulfur carrier protein ThiS. | 0.920 |
RN09_0514 | thiE | RN09_0514 | RN09_0513 | Thiamine biosynthesis oxidoreductase ThiO; Overlaps another CDS with the same product name. | Thiamine-phosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.657 |
RN09_0514 | thiG | RN09_0514 | RN09_0517 | Thiamine biosynthesis oxidoreductase ThiO; Overlaps another CDS with the same product name. | Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.942 |
RN09_1650 | MoeB2 | RN09_1650 | RN09_3785 | Sulfur carrier protein CysO. | Molybdenum cofactor biosynthesis protein MoeB. | 0.980 |
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