Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0601GMC-type oxidoreductase; Overlaps another CDS with the same product name. (364 aa)    
Predicted Functional Partners:
RN09_0600
GMC-type oxidoreductase; Overlaps another CDS with the same product name.
     0.993
RN09_0604
Hypothetical protein.
 
  
 0.954
RN09_0602
GMC-type oxidoreductase.
      0.910
RN09_0603
Hypothetical protein.
  
    0.837
RN09_0605
HTH-type transcriptional regulator.
 
     0.673
PE_PGRS30
PE-PGRS family protein PE_PGRS30.
  
 
  0.629
RN09_2079
Hypothetical protein.
  
 
 0.624
EmbR
Transcriptional regulator EmbR.
  
 
 0.623
RN09_3795
Transcriptional regulator MoaR.
    
 0.556
PE_PGRS13
PE-PGRS family protein PE_PGRS12.
    
  0.555
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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