Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0643Hypothetical protein. (202 aa)    
Predicted Functional Partners:
RN09_0644
Thioredoxin.
  
 
 0.988
HemL
Glutamate-1-semialdehyde 2,1-aminomutase.
  
  
 0.970
CcdA
Cytochrome C-type biogenesis protein CcdA.
  
    0.881
RN09_0646
Transmembrane protein.
  
    0.854
CcsA
Cytochrome C-type biogenesis protein CcsA.
  
    0.850
RN09_3289
Hypothetical protein.
  
     0.717
rbpA
RNA polymerase-binding protein RbpA; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.678
RN09_2255
HTH-type transcriptional regulator.
  
     0.670
RN09_3204
threonine--tRNA ligase.
  
 
   0.652
whiB-3
Transcriptional regulator WhiB1; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.648
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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