STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0644Thioredoxin. (203 aa)    
Predicted Functional Partners:
CcdA
Cytochrome C-type biogenesis protein CcdA.
 
  
 0.997
CcsA
Cytochrome C-type biogenesis protein CcsA.
  
  
 0.995
RN09_0643
Hypothetical protein.
  
 
 0.993
HemL
Glutamate-1-semialdehyde 2,1-aminomutase.
  
  
 0.985
RN09_0646
Transmembrane protein.
 
  
 0.981
msrA
Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
 0.915
AhpC
Alkyl hydroperoxide reductase subunit C.
  
 0.902
RN09_4488
Membrane-anchored thioredoxin-like protein.
 
   
 0.849
RN09_4012
NAD(P)H quinone reductase LpdA; Overlaps another CDS with the same product name.
 
 0.806
RN09_4013
NAD(P)H quinone reductase LpdA; Overlaps another CDS with the same product name.
 
 0.802
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.