Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CcdACytochrome C-type biogenesis protein CcdA. (259 aa)    
Predicted Functional Partners:
RN09_0644
Thioredoxin.
 
  
 0.991
CcsA
Cytochrome C-type biogenesis protein CcsA.
 
  
 0.988
RN09_0646
Transmembrane protein.
 
  
 0.981
HemL
Glutamate-1-semialdehyde 2,1-aminomutase.
  
  
 0.939
RN09_0643
Hypothetical protein.
  
    0.881
ArsC
Arsenic-transport integral membrane protein ArsC.
     
 0.728
Mpt53
Soluble secreted antigen Mpt53.
 
  
 0.687
DipZ
Integral membrane C-type cytochrome biogenesis protein DipZ.
 
  
0.645
ArsA
Arsenic-transport integral membrane protein ArsA.
      
 0.630
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
     
 0.617
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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