Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0664Integral membrane protein. (449 aa)    
Predicted Functional Partners:
RN09_0663
Hypothetical protein.
 
   
 0.933
GalE3
UDP-glucose 4-epimerase GalE.
 
  
 0.932
RN09_0662
Dolichyl-phosphate sugar synthase.
 
   
 0.921
MenE
2-succinylbenzoic acid--CoA ligase; Overlaps another CDS with the same product name.
  
    0.868
RN09_0666
2-succinylbenzoic acid--CoA ligase; Overlaps another CDS with the same product name.
  
    0.868
RN09_0267
Transmembrane protein.
 
     0.800
RN09_0667
Hypothetical protein.
       0.779
RN09_0268
Transmembrane protein.
 
     0.761
RN09_0668
Hypothetical protein.
       0.725
RN09_0671
Hypothetical protein.
       0.652
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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