Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mce2CMce family protein Mce2C. (436 aa)    
Predicted Functional Partners:
Mce2D
Mce family protein Mce2D.
 
 
 0.997
YrbE2B
Hypothetical protein.
 
 
 0.991
LprL
Mce family lipoprotein LprL.
 
 
 0.989
YrbE2A
Hypothetical protein.
 
 
 0.987
Mce1F
Mce family protein Mce1F.
 
 
 0.979
Mce2A
Mce family protein Mce2A; Overlaps another CDS with the same product name.
 
 
 0.966
Mce2B
Mammalian cell entry protein.
 
 
0.966
YrbE1B
Membrane protein.
 
 
 0.959
YrbE4B
Integral membrane protein.
 
 
 0.959
Mce1A
Mce family protein Mce1A; Overlaps another CDS with the same product name.
 
 
 0.954
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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