Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mce2DMce family protein Mce2D. (508 aa)    
Predicted Functional Partners:
Mce2C
Mce family protein Mce2C.
 
 
 0.997
LprL
Mce family lipoprotein LprL.
 
 
 0.997
Mce1C
Mce family protein Mce1C.
 
 
 0.979
Mce2B
Mammalian cell entry protein.
 
 
 0.972
RN09_0732
Mce family lipoprotein LprL.
  
 
 0.970
YrbE1B
Membrane protein.
 
 
 0.964
YrbE4B
Integral membrane protein.
 
 
 0.957
YrbE2A
Hypothetical protein.
 
 
 0.954
Mce2A
Mce family protein Mce2A; Overlaps another CDS with the same product name.
 
 
 0.954
Mce1B
Mce family protein Mce1B; Overlaps another CDS with the same product name.
 
 
 0.945
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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