Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
vapC-7Ribonuclease VapC28; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (133 aa)    
Predicted Functional Partners:
RN09_0771
Antitoxin VapB30.
 
 
 0.925
RN09_0751
Antitoxin VapB28.
  
 
 0.923
vapC-8
Ribonuclease VapC29; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
   
 0.824
RN09_0753
Hypothetical protein.
  
    0.816
vapC-12
Ribonuclease VapC31; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
      
 0.769
RN09_2142
Antitoxin VapB34.
  
 
 0.686
RN09_0750
Hypothetical protein.
       0.679
Mce4D
Mce family protein Mce4D; Overlaps another CDS with the same product name.
      
 0.663
Mce4B
Mce family protein Mce4B.
      
 0.660
YrbE4A
Integral membrane protein.
      
 0.660
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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