Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0767Galactokinase; Overlaps another CDS with the same product name. (70 aa)    
Predicted Functional Partners:
GalT
Hypothetical protein.
 
 
 0.995
GalK
Galactokinase; Overlaps another CDS with the same product name.
     0.989
RN09_0768
Hypothetical protein.
  
  
 0.811
RN09_2154
Hypothetical protein.
  
 
 0.527
Pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.523
RN09_0763
Antitoxin VapB29.
       0.496
vapC-8
Ribonuclease VapC29; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.494
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
   0.479
RN09_0807
Alpha-mannosidase; Overlaps another CDS with the same product name.
   
    0.470
RN09_0809
Alpha-mannosidase; Overlaps another CDS with the same product name.
   
    0.470
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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