Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0768Hypothetical protein. (44 aa)    
Predicted Functional Partners:
GalK
Galactokinase; Overlaps another CDS with the same product name.
  
  
 0.811
RN09_0767
Galactokinase; Overlaps another CDS with the same product name.
  
  
 0.811
GalT
Hypothetical protein.
     
 0.806
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
    
   0.588
RN09_0763
Antitoxin VapB29.
       0.494
vapC-8
Ribonuclease VapC29; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.494
PE_PGRS53
Hypothetical protein.
  
 
 0.465
RN09_0219
Mce associated protein.
   
 0.419
RN09_0220
Mce associated membrane protein.
   
 0.419
RN09_0244
Membrane protein.
   
 0.419
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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