Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
vapC-9Ribonuclease VapC30; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (131 aa)    
Predicted Functional Partners:
RN09_0771
Antitoxin VapB30.
 
 
 0.997
RN09_2142
Antitoxin VapB34.
  
 
 0.881
RN09_2424
Antitoxin ParD1.
  
    0.803
RN09_1715
HTH-type transcriptional regulator.
   
    0.762
SirR
Transcriptional repressor SirR.
   
    0.761
RN09_4565
AraC/XylS family transcriptional regulator.
   
    0.761
EthR
HTH-type transcriptional repressor EthR.
   
    0.761
RN09_1442
Transcriptional regulator.
   
    0.735
RN09_3866
Transcriptional regulator.
   
    0.730
vapC-17
Ribonuclease VapC11; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
  
 0.667
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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