Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0773Transmembrane protein. (246 aa)    
Predicted Functional Partners:
RN09_0774
Antitoxin VapB5; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.571
vapC-10
Ribonuclease VapC5; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.571
RN09_2924
Polyketide synthetase; Overlaps another CDS with the same product name.
  
     0.544
RN09_2432
Hypothetical protein.
 
     0.543
RN09_3275
Antibiotic ABC transporter permease.
  
   
 0.502
RN09_4744
ESX-1 secretion system protein EccE1.
  
     0.492
EsxA
ESAT-6 protein EsxA; Belongs to the WXG100 family.
  
     0.460
RN09_3274
Antibiotic ABC transporter permease.
  
     0.455
RN09_3725
Integral membrane protein.
   
  
 0.437
RN09_1838
TVP38/TMEM64 family membrane protein; Overlaps another CDS with the same product name.
  
     0.427
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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