Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MmaA1Mycolic acid methyltransferase MmaA1. (286 aa)    
Predicted Functional Partners:
RN09_0804
Hypothetical protein.
     
 0.764
RN09_0805
Hypothetical protein.
     
 0.764
LipG
Lipase/esterase LipG.
  
  
 0.694
MmaA2
Cyclopropane mycolic acid synthase MmaA2; Overlaps another CDS with the same product name.
 
   
0.577
RN09_0553
Hypothetical protein.
  
 0.568
RN09_0800
Cyclopropane mycolic acid synthase MmaA2; Overlaps another CDS with the same product name.
 
    
0.534
MmaA3
Methoxy mycolic acid synthase MmaA3.
 
  
0.513
RN09_0806
Alpha-mannosidase; Overlaps another CDS with the same product name.
       0.470
RN09_0807
Alpha-mannosidase; Overlaps another CDS with the same product name.
       0.450
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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