MmpS5 protein (Mycobacterium tuberculosis variant africanum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

MmpS5

Membrane protein MmpS5. (142 aa)

Predicted Functional Partners:

MmpL5

0.995

RN09_0841

0.985

RN09_0842

0.985

RN09_0843

0.985

RN09_0845

0.915

MmpL4

0.903

MmpL2

0.653

RN09_2869

0.608

RN09_2870

0.608

MmpL9

0.608

Your Current Organism:

Mycobacterium tuberculosis variant africanum

NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MmpL2	MmpS5	RN09_0623	RN09_0844	Transmembrane transport protein MmpL2.	Membrane protein MmpS5.	0.653
MmpL4	MmpS5	RN09_0554	RN09_0844	Transmembrane transport protein MmpL4.	Membrane protein MmpS5.	0.903
MmpL5	MmpS5	RN09_0840	RN09_0844	Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.	Membrane protein MmpS5.	0.995
MmpL5	RN09_0841	RN09_0840	RN09_0841	Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.	Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.	0.948
MmpL5	RN09_0842	RN09_0840	RN09_0842	Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.	Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.	0.949
MmpL5	RN09_0843	RN09_0840	RN09_0843	Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.	Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.	0.811
MmpL5	RN09_0845	RN09_0840	RN09_0845	Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.	Hypothetical protein.	0.844
MmpL5	RN09_2869	RN09_0840	RN09_2869	Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.	Transmembrane transport protein MmpL9; Overlaps another CDS with the same product name.	0.680
MmpL9	MmpS5	RN09_2871	RN09_0844	Transmembrane transport protein MmpL9.	Membrane protein MmpS5.	0.608
MmpL9	RN09_0841	RN09_2871	RN09_0841	Transmembrane transport protein MmpL9.	Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.	0.737
MmpL9	RN09_0842	RN09_2871	RN09_0842	Transmembrane transport protein MmpL9.	Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.	0.728
MmpL9	RN09_2869	RN09_2871	RN09_2869	Transmembrane transport protein MmpL9.	Transmembrane transport protein MmpL9; Overlaps another CDS with the same product name.	0.868
MmpL9	RN09_2870	RN09_2871	RN09_2870	Transmembrane transport protein MmpL9.	Transmembrane transport protein MmpL9; Overlaps another CDS with the same product name.	0.903
MmpS5	MmpL2	RN09_0844	RN09_0623	Membrane protein MmpS5.	Transmembrane transport protein MmpL2.	0.653
MmpS5	MmpL4	RN09_0844	RN09_0554	Membrane protein MmpS5.	Transmembrane transport protein MmpL4.	0.903
MmpS5	MmpL5	RN09_0844	RN09_0840	Membrane protein MmpS5.	Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.	0.995
MmpS5	MmpL9	RN09_0844	RN09_2871	Membrane protein MmpS5.	Transmembrane transport protein MmpL9.	0.608
MmpS5	RN09_0841	RN09_0844	RN09_0841	Membrane protein MmpS5.	Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.	0.985
MmpS5	RN09_0842	RN09_0844	RN09_0842	Membrane protein MmpS5.	Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.	0.985
MmpS5	RN09_0843	RN09_0844	RN09_0843	Membrane protein MmpS5.	Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.	0.985