Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0845Hypothetical protein. (165 aa)    
Predicted Functional Partners:
MmpS5
Membrane protein MmpS5.
  
  
 0.915
MmpL5
Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.
  
  
 0.844
RN09_0841
Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.
  
  
 0.844
RN09_0842
Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.
  
  
 0.844
RN09_0843
Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.
  
  
 0.844
RN09_3840
TetR family transcriptional regulator.
   
    0.761
PepQ
Cytoplasmic peptidase PepQ.
      
 0.684
atpE
ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
      
 0.672
RN09_2433
Permease.
      
 0.672
RN09_3727
DeoR family transcriptional regulator.
  
  
 0.607
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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