Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0883Transmembrane protein. (286 aa)    
Predicted Functional Partners:
RN09_4774
Alanine/proline-rich protein; Overlaps another CDS with the same product name.
  
     0.721
RN09_2069
Hypothetical protein.
  
     0.690
RN09_3848
Hypothetical protein.
  
     0.669
RN09_4219
Alanine/valine-rich protein.
  
     0.621
RN09_0362
Hypothetical protein; Catalyzes the sulfuryl group transfer from 3'- phosphoadenosine-5'-phosphosulfate (PAPS) to trehalose, leading to trehalose-2-sulfate (T2S).
  
     0.586
RN09_2187
Hypothetical protein.
  
     0.557
RN09_0882
Hypothetical protein.
 
     0.538
RN09_2501
Universal stress protein.
  
     0.515
RN09_1948
Hypothetical protein.
  
     0.499
RN09_1726
Transcriptional regulator.
  
     0.495
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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