Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XylBD-xylulose kinase XylB. (290 aa)    
Predicted Functional Partners:
Rpe
Ribulose-phosphate 3-epimerase; Overlaps another CDS with the same product name.
  
 0.942
FucA
L-fuculose phosphate aldolase FucA.
 
  
 0.932
SerA2
D-3-phosphoglycerate dehydrogenase SerA; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
    0.851
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
 
 0.722
RN09_1240
Hypothetical protein.
 
  
 0.688
RN09_2306
Hypothetical protein.
  
   
 0.686
RN09_4384
LacI family transcriptional regulator; Overlaps another CDS with the same product name.
 
 
 
 0.643
RN09_4385
LacI family transcriptional regulator; Overlaps another CDS with the same product name.
 
 
 
 0.579
RN09_0934
Hypothetical protein.
     
 0.521
RN09_2522
Hypothetical protein.
  
   
 0.512
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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