Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PPE12 | RN09_0931 | RN09_0932 | RN09_0931 | PPE family protein PPE12; Overlaps another CDS with the same product name; Belongs to the mycobacterial PPE family. | PPE family protein PPE12; Overlaps another CDS with the same product name. | 0.773 |
PPE12 | RN09_0933 | RN09_0932 | RN09_0933 | PPE family protein PPE12; Overlaps another CDS with the same product name; Belongs to the mycobacterial PPE family. | DNA-binding protein. | 0.402 |
RN09_0931 | PPE12 | RN09_0931 | RN09_0932 | PPE family protein PPE12; Overlaps another CDS with the same product name. | PPE family protein PPE12; Overlaps another CDS with the same product name; Belongs to the mycobacterial PPE family. | 0.773 |
RN09_0931 | RN09_0933 | RN09_0931 | RN09_0933 | PPE family protein PPE12; Overlaps another CDS with the same product name. | DNA-binding protein. | 0.402 |
RN09_0933 | PPE12 | RN09_0933 | RN09_0932 | DNA-binding protein. | PPE family protein PPE12; Overlaps another CDS with the same product name; Belongs to the mycobacterial PPE family. | 0.402 |
RN09_0933 | RN09_0931 | RN09_0933 | RN09_0931 | DNA-binding protein. | PPE family protein PPE12; Overlaps another CDS with the same product name. | 0.402 |
RN09_0933 | RN09_0934 | RN09_0933 | RN09_0934 | DNA-binding protein. | Hypothetical protein. | 0.788 |
RN09_0933 | XylB | RN09_0933 | RN09_0899 | DNA-binding protein. | D-xylulose kinase XylB. | 0.539 |
RN09_0934 | RN09_0933 | RN09_0934 | RN09_0933 | Hypothetical protein. | DNA-binding protein. | 0.788 |
RN09_0934 | XylB | RN09_0934 | RN09_0899 | Hypothetical protein. | D-xylulose kinase XylB. | 0.664 |
XylB | RN09_0933 | RN09_0899 | RN09_0933 | D-xylulose kinase XylB. | DNA-binding protein. | 0.539 |
XylB | RN09_0934 | RN09_0899 | RN09_0934 | D-xylulose kinase XylB. | Hypothetical protein. | 0.664 |