Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0945HTH-type transcriptional regulator. (213 aa)    
Predicted Functional Partners:
RN09_0940
Hypothetical protein.
 
   
 0.969
RN09_0943
Oxidoreductase.
 
   
 0.968
Cyp51
Lanosterol 14-alpha demethylase; Belongs to the cytochrome P450 family.
 
   
 0.965
RN09_0941
Ferredoxin.
 
   
 0.962
Cyp123
Cytochrome P450 Cyp123.
 
   
 0.908
RN09_0949
4-carboxymuconolactone decarboxylase.
 
     0.815
RN09_0385
Hypothetical protein.
 
     0.808
RN09_2444
HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
 
 0.779
RN09_3849
TetR family transcriptional regulator.
  
    0.779
RN09_0605
HTH-type transcriptional regulator.
   
  
 0.764
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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