Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
RN09_09494-carboxymuconolactone decarboxylase. (132 aa)    
Predicted Functional Partners:
RN09_0948
Oxidoreductase.
 
  
 0.978
RN09_0940
Hypothetical protein.
 
    0.920
Cyp51
Lanosterol 14-alpha demethylase; Belongs to the cytochrome P450 family.
 
  
 0.918
AldA
Aldehyde dehydrogenase AldA; Belongs to the aldehyde dehydrogenase family.
 
  
 0.894
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
       0.861
RN09_0943
Oxidoreductase.
 
  
 0.840
RN09_0941
Ferredoxin.
 
    0.834
RN09_0945
HTH-type transcriptional regulator.
 
     0.815
RN09_0947
Oxidoreductase.
 
  
 0.809
RN09_0385
Hypothetical protein.
 
     0.806
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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