Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0953Hypothetical protein. (108 aa)    
Predicted Functional Partners:
RN09_0952
Hypothetical protein.
     0.981
GgtA
Bifunctional cephalosporin acylase/gamma-glutamyltranspeptidase.
       0.789
RN09_0357
Transmembrane protein.
  
     0.654
RN09_0510
Membrane protein; Overlaps another CDS with the same product name.
 
  
 0.635
RN09_0331
Hypothetical protein.
  
   
 0.607
RN09_0201
Zinc-type alcohol dehydrogenase subunit E; Overlaps another CDS with the same product name.
  
 
 0.572
AdhE1
Zinc-type alcohol dehydrogenase subunit E; Overlaps another CDS with the same product name.
  
 
 0.572
AdhB
Alcohol dehydrogenase B.
  
 
 0.572
AdhE2
S-nitrosomycothiol reductase MscR.
  
 
 0.572
AdhD
Alcohol dehydrogenase D.
  
 
 0.572
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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