Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0959Transmembrane protein. (206 aa)    
Predicted Functional Partners:
PtrB
Protease.
       0.636
purC
Phosphoribosylaminoimidazole-succinocarboxamide synthase; Belongs to the SAICAR synthetase family.
       0.621
RN09_0634
Acyltransferase.
  
     0.590
RN09_4618
Transmembrane protein.
  
     0.528
RN09_1668
HTH-type transcriptional regulator.
  
     0.511
RN09_1073
Hypothetical protein.
  
     0.502
RN09_3848
Hypothetical protein.
  
     0.462
RN09_0061
Membrane protein.
  
     0.454
RN09_3103
Hypothetical protein.
  
     0.439
RN09_4477
Hypothetical protein.
  
     0.428
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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