Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0975Transcriptional regulator. (269 aa)    
Predicted Functional Partners:
RN09_0974
Hypothetical protein.
     
 0.839
RN09_0976
Monooxygenase.
 
  
 0.835
RN09_0973
Hypothetical protein.
 
   
 0.832
NadR
Transcriptional regulator NadR.
   
  
 0.801
RN09_3866
Transcriptional regulator.
   
  
 0.777
RN09_3525
TetR family HTH-type transcriptional regulator.
   
  
 0.769
NagA
N-acetylglucosamine-6-phosphate deacetylase NagA.
 
  
 0.762
RN09_2058
Transcriptional regulator.
  
  
 0.760
RN09_0945
HTH-type transcriptional regulator.
   
  
 0.739
RN09_0605
HTH-type transcriptional regulator.
  
  
 0.721
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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