Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RN09_0979Insertion sequence element IS1547 transposase. (255 aa)    
Predicted Functional Partners:
RN09_0978
Transposase fusion protein.
      0.881
RN09_1192
PE-PGRS family protein PE_PGRS16.
  
     0.487
RN09_2675
Transposase.
  
     0.435
RN09_2976
Transposase.
  
     0.428
RN09_4330
Oxidoreductase.
      
 0.417
RN09_4331
Hypothetical protein.
      
 0.417
RN09_3606
Methyltransferase.
  
    0.414
RN09_2481
Transposase.
  
     0.406
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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