Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_1001Exported protein. (270 aa)    
Predicted Functional Partners:
ThiX
Thioredoxin ThiX.
 
   
 0.901
RN09_0470
Hypothetical protein.
  
     0.773
RN09_3335
Transmembrane alanine-rich protein.
  
     0.764
HbhA
Heparin binding hemagglutinin HbhA.
  
     0.763
LprC
Lipoprotein LprC.
  
     0.762
RN09_1974
Membrane protein.
  
     0.760
RN09_0357
Transmembrane protein.
  
     0.758
RN09_3943
Lipoprotein LpqB.
  
     0.758
RN09_0682
Transmembrane protein.
  
     0.752
RN09_4706
Hypothetical protein.
  
     0.752
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.