Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_1102Peptidoglycan-binding protein ArfA; Overlaps another CDS with the same product name. (152 aa)    
Predicted Functional Partners:
OmpA
Peptidoglycan-binding protein ArfA; Overlaps another CDS with the same product name.
      0.909
RN09_1104
Membrane protein; Overlaps another CDS with the same product name.
 
   
 0.865
RN09_1103
Membrane protein; Overlaps another CDS with the same product name.
     
 0.844
RN09_1100
Hypothetical protein.
       0.600
RN09_1098
Oxidoreductase; Overlaps another CDS with the same product name.
       0.532
RN09_1099
Oxidoreductase; Overlaps another CDS with the same product name.
       0.532
atpF-2
ATP synthase subunit b/delta; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction; Belongs to the ATPase delta chain family.
  
  
 0.526
RN09_1431
Hypothetical protein.
 
 
 0.511
RN09_1088
Hypothetical protein.
   
  
 0.502
RN09_1192
PE-PGRS family protein PE_PGRS16.
 
  
 0.426
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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