RN09_1104 protein (Mycobacterium tuberculosis variant africanum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

RN09_1104

Membrane protein; Overlaps another CDS with the same product name. (175 aa)

Predicted Functional Partners:

RN09_1103

0.956

RN09_1102

0.865

OmpA

0.846

RN09_4744

0.600

RN09_1100

0.595

RN09_2924

0.585

RN09_4566

0.582

IniB

0.559

RN09_4175

0.550

RN09_4738

0.542

Your Current Organism:

Mycobacterium tuberculosis variant africanum

NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IniB	OmpA	RN09_0421	RN09_1101	Isoniazid inducible protein IniB.	Peptidoglycan-binding protein ArfA; Overlaps another CDS with the same product name.	0.404
IniB	RN09_1102	RN09_0421	RN09_1102	Isoniazid inducible protein IniB.	Peptidoglycan-binding protein ArfA; Overlaps another CDS with the same product name.	0.404
IniB	RN09_1104	RN09_0421	RN09_1104	Isoniazid inducible protein IniB.	Membrane protein; Overlaps another CDS with the same product name.	0.559
IniB	RN09_2924	RN09_0421	RN09_2924	Isoniazid inducible protein IniB.	Polyketide synthetase; Overlaps another CDS with the same product name.	0.684
IniB	RN09_4738	RN09_0421	RN09_4738	Isoniazid inducible protein IniB.	ESX-1 secretion system protein EccD1; Overlaps another CDS with the same product name.	0.698
IniB	RN09_4744	RN09_0421	RN09_4744	Isoniazid inducible protein IniB.	ESX-1 secretion system protein EccE1.	0.720
OmpA	IniB	RN09_1101	RN09_0421	Peptidoglycan-binding protein ArfA; Overlaps another CDS with the same product name.	Isoniazid inducible protein IniB.	0.404
OmpA	RN09_1100	RN09_1101	RN09_1100	Peptidoglycan-binding protein ArfA; Overlaps another CDS with the same product name.	Hypothetical protein.	0.600
OmpA	RN09_1102	RN09_1101	RN09_1102	Peptidoglycan-binding protein ArfA; Overlaps another CDS with the same product name.	Peptidoglycan-binding protein ArfA; Overlaps another CDS with the same product name.	0.909
OmpA	RN09_1103	RN09_1101	RN09_1103	Peptidoglycan-binding protein ArfA; Overlaps another CDS with the same product name.	Membrane protein; Overlaps another CDS with the same product name.	0.844
OmpA	RN09_1104	RN09_1101	RN09_1104	Peptidoglycan-binding protein ArfA; Overlaps another CDS with the same product name.	Membrane protein; Overlaps another CDS with the same product name.	0.846
RN09_1100	OmpA	RN09_1100	RN09_1101	Hypothetical protein.	Peptidoglycan-binding protein ArfA; Overlaps another CDS with the same product name.	0.600
RN09_1100	RN09_1102	RN09_1100	RN09_1102	Hypothetical protein.	Peptidoglycan-binding protein ArfA; Overlaps another CDS with the same product name.	0.600
RN09_1100	RN09_1103	RN09_1100	RN09_1103	Hypothetical protein.	Membrane protein; Overlaps another CDS with the same product name.	0.564
RN09_1100	RN09_1104	RN09_1100	RN09_1104	Hypothetical protein.	Membrane protein; Overlaps another CDS with the same product name.	0.595
RN09_1102	IniB	RN09_1102	RN09_0421	Peptidoglycan-binding protein ArfA; Overlaps another CDS with the same product name.	Isoniazid inducible protein IniB.	0.404
RN09_1102	OmpA	RN09_1102	RN09_1101	Peptidoglycan-binding protein ArfA; Overlaps another CDS with the same product name.	Peptidoglycan-binding protein ArfA; Overlaps another CDS with the same product name.	0.909
RN09_1102	RN09_1100	RN09_1102	RN09_1100	Peptidoglycan-binding protein ArfA; Overlaps another CDS with the same product name.	Hypothetical protein.	0.600
RN09_1102	RN09_1103	RN09_1102	RN09_1103	Peptidoglycan-binding protein ArfA; Overlaps another CDS with the same product name.	Membrane protein; Overlaps another CDS with the same product name.	0.844
RN09_1102	RN09_1104	RN09_1102	RN09_1104	Peptidoglycan-binding protein ArfA; Overlaps another CDS with the same product name.	Membrane protein; Overlaps another CDS with the same product name.	0.865