Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_1111Hypothetical protein. (154 aa)    
Predicted Functional Partners:
RN09_1110
Hypothetical protein.
     0.994
RN09_1112
Hypothetical protein.
     0.987
LpqK
Lipoprotein LpqK.
  
   
 0.684
CtpE
Metal cation transporter ATPase E.
  
  
 0.666
RN09_1109
Hypothetical protein.
     
 0.595
EchA6
enoyl-CoA hydratase EchA6; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.577
RN09_0223
Transmembrane protein.
 
     0.542
RN09_2126
Penicillin-binding protein.
  
     0.524
AccD3
acetyl-CoAcarboxylase carboxyl transferase subunit beta.
     
 0.483
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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