STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_1208Adhesion component ABC transporter ATP-binding protein. (248 aa)    
Predicted Functional Partners:
RN09_0090
Glutamine ABC transporter permease.
  
 
 0.882
RN09_3147
Glutamine ABC transporter permease.
  
 
 0.882
RN09_1209
Adhesion component ABC transporter permease.
 
  
 0.806
RN09_1213
Adhesion component ABC transporter permease.
 
  
 0.805
RN09_1211
Adhesion component ABC transporter permease.
 
  
 0.790
RN09_1212
Adhesion component ABC transporter permease.
 
  
 0.775
RN09_1210
Adhesion component ABC transporter permease.
 
  
 0.763
RN09_1214
Hypothetical protein.
 
  
 0.677
pheS
phenylalanine--tRNA ligase subunit alpha; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
 
 
 0.672
RN09_0537
ATPase; Belongs to the AAA ATPase family.
  
     0.665
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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