STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_1368Hypothetical protein. (229 aa)    
Predicted Functional Partners:
RN09_1369
Esterase/lipase.
     0.927
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
 0.776
RN09_3267
Alanine-rich protein.
    
  0.746
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
  0.728
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.717
RN09_0519
Lipoprotein aminopeptidase LpqL; Overlaps another CDS with the same product name.
  
 0.700
LpqL
Lipoprotein aminopeptidase LpqL; Overlaps another CDS with the same product name.
  
 0.700
RN09_2183
Hypothetical protein.
  
 0.700
RpsA
30S ribosomal protein S1.
   
 
  0.697
RN09_1543
ATP-dependent RNA helicase DeaD; Overlaps another CDS with the same product name.
   
 0.679
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.